Uanble to allocate atlas passives awarded by books

I died and couldn't return to the map. The map included my first encounter with
Dannig via expedition and my first boss. Map was Tier 1

Dannig and Zelina awarded me atlas point books, totaling 4 points. I am unable to allocate these points. Later on, Alva, awarded me a book after my first delirium map (this map was completed successfully). Again, cannot allocate the points.

I have 8 points that I now cannot spend. I'm unsure if my altas needs to be reset, and my searches have turned up no similar situations. I have verified files, and reinstalled the game. It has not fixed it. Points awarded by corrupted nexus work fine.